gatk-3.8

Commit Graph

Author	SHA1	Message	Date
kshakir	08c13f3944	Using embedded GATK. Hardcoded the reference and dbsnp since the training rods are also hardcoded, for now. Changed freeze/chr20 to wg/chr20/cent1 to also test the heaviest known shard. Other cleanup. TODO: Memory command line options or have the script figure it out using FLS or similar. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5799 348d0f76-0448-11de-a6fe-93d51630548a	2011-05-12 23:19:49 +00:00

Author

SHA1

Message

Date

kshakir

08c13f3944

Using embedded GATK.

Hardcoded the reference and dbsnp since the training rods are also hardcoded, for now.
Changed freeze/chr20 to wg/chr20/cent1 to also test the heaviest known shard.
Other cleanup.
TODO: Memory command line options or have the script figure it out using FLS or similar.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5799 348d0f76-0448-11de-a6fe-93d51630548a

2011-05-12 23:19:49 +00:00

1 Commits (08c13f39446a793805d062bdbba17f2be38d952e)