fromer
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d6e3f2eba6
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Added GC content calculator for CNV data
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5240 348d0f76-0448-11de-a6fe-93d51630548a
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2011-02-14 22:29:55 +00:00 |
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fromer
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cdf53188d6
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Updated DoC to work with scatter-gather; and, also manually implemented scatter-gather by sample above the scatter-gather by interval. Thansk to Khalid for his support!
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5231 348d0f76-0448-11de-a6fe-93d51630548a
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2011-02-11 19:14:42 +00:00 |
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fromer
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8d0f1b75d5
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Added queue/util/BAMutilities Object [with BAM and VCF parsing utilities], which is now used by my qscripts that robustly split runs by sample
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5214 348d0f76-0448-11de-a6fe-93d51630548a
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2011-02-07 22:17:29 +00:00 |
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fromer
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3c1a026c94
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Updated script to properly bin DoC values so that down-sampling corresponds to range of DoC values obtainable
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5208 348d0f76-0448-11de-a6fe-93d51630548a
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2011-02-07 16:47:55 +00:00 |
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fromer
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8b8b4fced1
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Removed explicit memoryLimit, so that memLimit given on the command-line will NOT be ignored...
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5202 348d0f76-0448-11de-a6fe-93d51630548a
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2011-02-06 01:55:17 +00:00 |
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fromer
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4cdc974c5f
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Preliminary Qscript to run DoC for the purpose of CNV detection
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5194 348d0f76-0448-11de-a6fe-93d51630548a
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2011-02-04 21:25:59 +00:00 |