hanna
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5d1345539d
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Packaging cleanup.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1242 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-14 21:00:02 +00:00 |
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hanna
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25365ccb07
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Adding more walkers to the base GATK package.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1241 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-14 20:40:52 +00:00 |
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hanna
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d0cef5ff9d
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Oops. Specified incorrect classname in packgae for depth of coverage walker.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1161 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-02 21:40:40 +00:00 |
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hanna
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62807139fc
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Cleanup pileup and depth of coverage in preparation for release. Add pileup, depth of coverage, and print reads to package for distribution.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1159 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-02 14:54:01 +00:00 |
aaron
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6570ce0b5b
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added the example files to the distro
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1152 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-01 23:16:42 +00:00 |
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hanna
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e93f751bd7
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First step in replacing the Hello, World! document. Revamped the HelloWalker and checked it into the source tree, created a special build file for it, and added it to the packaging tool.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1135 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-30 21:59:54 +00:00 |
depristo
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5289230eb8
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Version 0.2.1 (released) of the TableRecalibrator
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1108 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-25 22:50:55 +00:00 |
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hanna
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af7a759ba4
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Convert the somatic coverage tool to output from the packaging tool rather than from the dist target.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1050 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-18 21:29:30 +00:00 |
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hanna
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f45d5a73a5
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Package annotator for Alec.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1038 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-17 22:40:40 +00:00 |
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hanna
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ed7fac1c90
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Add bcel and cleanup.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1032 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-17 19:28:04 +00:00 |
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hanna
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e2ccea4883
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Cleanup. Move output of packaging to dist directory. Don't always create resources directory. Make jar take on the package name.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1023 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-16 22:47:23 +00:00 |
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hanna
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29df74ae23
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Plumbed packaging support into build.xml and added package for GATK.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1012 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-15 19:41:16 +00:00 |
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hanna
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93dc2cdc70
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Start of a 'package' format for xml files which should be distributed together.
Uses xslt scripts to transform packages into build scripts.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1005 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-15 00:52:48 +00:00 |