gatk-3.8

Author	SHA1	Message	Date
hanna	c1e53d407d	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had unicode quote characters embedded in it. These characters were invisible inside IntelliJ but cause compile warnings for Ryan and Aaron, who for whatever reason have a different default charset. Fixed. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3203 348d0f76-0448-11de-a6fe-93d51630548a	2010-04-20 15:26:32 +00:00
hanna	1bc26f69e9	An attempt to cleanup the Utils directory. Email to follow. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3198 348d0f76-0448-11de-a6fe-93d51630548a	2010-04-19 23:00:08 +00:00
aaron	790d2a7776	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2918 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-03 15:56:44 +00:00
ebanks	a09fee2b5e	Moved some more walkers to oneoffprojects and killed an old indel-related walker that isn't being used. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2228 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-02 20:28:07 +00:00