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4 Commits (0215905bb66eec6636405ab2d12468b00cc761f4)

Author SHA1 Message Date
aaron 0215905bb6 Added an adapter class, that will adapt plain iterators and closeable iterators of SAMRecords into STingSAMIterators. Also unit tests. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@697 348d0f76-0448-11de-a6fe-93d51630548a
 2009-05-14 15:17:32 +00:00
aaron 63403d32cd Changes to the interface to the simple data source rippled out to a bunch of files. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@572 348d0f76-0448-11de-a6fe-93d51630548a
 2009-04-30 20:35:56 +00:00
aaron 6db9127f90 Added changes to shattering, refactored SAMBAM into SAM 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@426 348d0f76-0448-11de-a6fe-93d51630548a
 2009-04-15 13:52:56 +00:00
aaron e6fb122d7d Added some fixes and new iterator tests 
--This lin e, and those below, will be ignored--

A    gatk/iterators
AM   gatk/iterators/BoundedReadIteratorTest.java
M    gatk/dataSources/simpleDataSources/SAMBAMDataSourceTest.java


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@420 348d0f76-0448-11de-a6fe-93d51630548a
 2009-04-14 22:19:36 +00:00