gatk-3.8

Author	SHA1	Message	Date
chartl	0142047da9	And a bugfix 3 seconds later. Don't tell java to use up to 20g while telling the farm to kill the job if it tries to exceed 4g. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4388 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-30 02:08:47 +00:00
chartl	06970ae039	A qscript that refines genotypes with beagle and merges them into one vcf (running currently on the recent chr20 production calls). This will be librarized soon; but if you need to do something like this, feel free to cannibalize. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4387 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-30 02:05:30 +00:00
chartl	2708e83198	For show (Queue works nicely): An analysis script that runs QC for the omni chip git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4380 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-29 15:04:17 +00:00