102 Commits (0111505ea9e2e3df4c8e5ce3553df45cd0e64eca)

Author	SHA1	Message	Date
Mauricio Carneiro	f4463d38ca	BWA requires pair ended reads to be sorted by read names when operating over BAM files, but Picard sorts by coordinate, so in case we use BWA in pair ended reads, the pipeline now resorts the BAM in read name order, realigns it then sorts it in coordinate order.	2011-06-30 14:29:21 -04:00
Mauricio Carneiro	efd99c3c11	new home for the core qscripts	2011-06-30 11:32:06 -04:00