zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Trivial change to support filter field in VCF 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2636 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-01-19 22:56:22 +00:00
parent 4625261d79
commit ff66023d83
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantDBCoverage.java
View File

@ -64,7 +64,7 @@ public class VariantDBCoverage extends BasicVariantAnalysis implements GenotypeA
Variation dbsnp = null; Variation dbsnp = null;
for (ReferenceOrderedDatum d : dbsnpList) { for (ReferenceOrderedDatum d : dbsnpList) {
if (((Variation) d).isSNP()) { if (((Variation) d).isSNP() && (! (d instanceof RodVCF) || ! ((RodVCF)d).isFiltered())) {
dbsnp = (Variation)d; dbsnp = (Variation)d;
break; break;
} }