diff --git a/analysis/depristo/distributedGATK/distributedGATKMetrics.py b/analysis/depristo/distributedGATK/distributedGATKMetrics.py
index c7d50d59e..ed8beedec 100755
--- a/analysis/depristo/distributedGATK/distributedGATKMetrics.py
+++ b/analysis/depristo/distributedGATK/distributedGATKMetrics.py
@@ -32,6 +32,8 @@ def main():
         print file, dataset, parallelType, nWays, formatTime(startTime), formatTime(endTime), endToEnd(endTime, startTime), perMSites, runtime
     
 def endToEnd(endTime, startTime):
+    if endTime < startTime:
+        endTime = endTime + datetime.timedelta(1)
     #print 'endToEnd', endTime, startTime
     return total_minutes(endTime - startTime)
     
diff --git a/analysis/depristo/distributedGATK/runqueue.csh b/analysis/depristo/distributedGATK/runqueue.csh
index 7ace30a15..78539cb81 100755
--- a/analysis/depristo/distributedGATK/runqueue.csh
+++ b/analysis/depristo/distributedGATK/runqueue.csh
@@ -1,9 +1,10 @@
 #!/bin/tcsh
 
-setenv CMD "java -Djava.io.tmpdir=/broad/shptmp/depristo/tmp -jar /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/dist/Queue.jar -statusTo depristo -S /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/scala/qscript/oneoffs/depristo/distributedGATKPerformance.scala -bsub --gatkjarfile /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/dist/GenomeAnalysisTK.jar -dataset HiSeq $argv[2-$#argv]"
+setenv CMD "java -Djava.io.tmpdir=/broad/shptmp/depristo/tmp -jar /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/dist/Queue.jar -statusTo depristo -S /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/analysis/depristo/distributedGATK/distributedGATKPerformance.scala -bsub --gatkjarfile /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/dist/GenomeAnalysisTK.jar -dataset HiSeq $argv[2-$#argv]"
 
 if ( $1 == 1 ) then
   pushd short; $CMD -jobQueue hour -run &
+else if ( $1 == 2 ) then
   pushd long; $CMD -jobQueue gsa -long -run &
 else
   $CMD