From fe9e52c47e53a6504d51c1fa5f586b3a5e5f355f Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 18 Mar 2009 15:50:17 +0000
Subject: [PATCH] allow on fly sorting AND validation

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@86 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../java/src/org/broadinstitute/sting/gatk/TraversalEngine.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/playground/java/src/org/broadinstitute/sting/gatk/TraversalEngine.java b/playground/java/src/org/broadinstitute/sting/gatk/TraversalEngine.java
index 225cac013..9ca8dadeb 100755
--- a/playground/java/src/org/broadinstitute/sting/gatk/TraversalEngine.java
+++ b/playground/java/src/org/broadinstitute/sting/gatk/TraversalEngine.java
@@ -315,7 +315,7 @@ public class TraversalEngine {
 
         if ( SORT_ON_FLY )
             samReadIter = new SortSamIterator(samReadIter, MAX_ON_FLY_SORTS);
-        else if ( beSafeP )
+        if ( beSafeP )
             samReadIter = new VerifyingSamIterator(samReadIter);
         
         if ( THREADED_IO ) {