diff --git a/packages/GenomeAnalysisTK.xml b/packages/GenomeAnalysisTK.xml index 25c732968..f7658ac98 100644 --- a/packages/GenomeAnalysisTK.xml +++ b/packages/GenomeAnalysisTK.xml @@ -13,6 +13,15 @@ org.broadinstitute.sting.gatk.walkers.recalibration.CovariateCounterWalker org.broadinstitute.sting.gatk.walkers.recalibration.TableRecalibrationWalker + + org.broadinstitute.sting.gatk.walkers.recalibration.DinucCovariate + org.broadinstitute.sting.gatk.walkers.recalibration.PositionCovariate + org.broadinstitute.sting.gatk.walkers.recalibration.MinimumNQSCovariate + org.broadinstitute.sting.gatk.walkers.recalibration.MappingQualityCovariate + org.broadinstitute.sting.gatk.walkers.recalibration.QualityScoreCovariate + org.broadinstitute.sting.gatk.walkers.recalibration.PrimerRoundCovariate + org.broadinstitute.sting.gatk.walkers.recalibration.CycleCovariate + org.broadinstitute.sting.gatk.walkers.recalibration.ReadGroupCovariate org.broadinstitute.sting.gatk.walkers.indels.CleanedReadInjector org.broadinstitute.sting.gatk.walkers.indels.IndelIntervalWalker