From fe2a0bb3a6f8a57ccf5359e39639c337a80ca05b Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 7 Sep 2010 00:44:07 +0000
Subject: [PATCH] Fix for DoC issue with multiplexer -- will retire use of
 multiplexer when GATK reporting structure comes online.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4217 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GenomeAnalysisTK.xml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/packages/GenomeAnalysisTK.xml b/packages/GenomeAnalysisTK.xml
index 0ecb68d43..1045f629c 100644
--- a/packages/GenomeAnalysisTK.xml
+++ b/packages/GenomeAnalysisTK.xml
@@ -21,6 +21,8 @@
       <package name="org.broad.tribble.*" />
       <!-- Basic qc walkers -->
       <class name="org.broadinstitute.sting.gatk.walkers.coverage.DepthOfCoverageWalker" />
+      <class name="org.broadinstitute.sting.gatk.walkers.coverage.DoCOutputMultiplexer" />
+
       <class name="org.broadinstitute.sting.gatk.refdata.tracks.builders.RODTrackBuilder" />
       <class name="org.broadinstitute.sting.gatk.walkers.PileupWalker" />
       <class name="org.broadinstitute.sting.gatk.walkers.PrintReadsWalker" />