One-off walker but techdev may find it useful and expand on it: given a BAM, output series of intervals to file (as interval_list [default] or BED [if -bed used]) where there is coverage. Additionally, print out to stdout at the end total covered bases and total covered bases including soft-clips

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Guillermo del Angel 2012-05-31 20:47:37 -04:00

parent 3a15ba2102

commit fdf607c3a9

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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