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Queue now outputs a GATK-like header with version number, build timestamp, etc.

This commit is contained in:
David Roazen 2011-11-23 13:31:39 -05:00
parent e319079c32
commit fdd90825a1
1 changed files with 39 additions and 1 deletions
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40
public/scala/src/org/broadinstitute/sting/queue/QCommandLine.scala
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@ -26,7 +26,6 @@ package org.broadinstitute.sting.queue
import function.QFunction import function.QFunction
import java.io.File import java.io.File
import java.util.Arrays
import org.broadinstitute.sting.commandline._ import org.broadinstitute.sting.commandline._
import org.broadinstitute.sting.queue.util._ import org.broadinstitute.sting.queue.util._
import org.broadinstitute.sting.queue.engine.{QGraphSettings, QGraph} import org.broadinstitute.sting.queue.engine.{QGraphSettings, QGraph}
@ -34,6 +33,9 @@ import collection.JavaConversions._
import org.broadinstitute.sting.utils.classloader.PluginManager import org.broadinstitute.sting.utils.classloader.PluginManager
import org.broadinstitute.sting.utils.exceptions.UserException import org.broadinstitute.sting.utils.exceptions.UserException
import org.broadinstitute.sting.utils.io.IOUtils import org.broadinstitute.sting.utils.io.IOUtils
import org.broadinstitute.sting.utils.help.ApplicationDetails
import java.util.{ResourceBundle, Arrays}
import org.broadinstitute.sting.utils.text.TextFormattingUtils
/** /**
* Entry point of Queue. Compiles and runs QScripts passed in to the command line. * Entry point of Queue. Compiles and runs QScripts passed in to the command line.
@ -175,6 +177,42 @@ class QCommandLine extends CommandLineProgram with Logging {
override def getArgumentTypeDescriptors = override def getArgumentTypeDescriptors =
Arrays.asList(new ScalaCompoundArgumentTypeDescriptor) Arrays.asList(new ScalaCompoundArgumentTypeDescriptor)
override def getApplicationDetails : ApplicationDetails = {
new ApplicationDetails(createQueueHeader(),
List.empty[String],
ApplicationDetails.createDefaultRunningInstructions(getClass.asInstanceOf[Class[CommandLineProgram]]),
"")
}
private def createQueueHeader() : List[String] = {
List(String.format("Queue v%s, Compiled %s", getQueueVersion, getBuildTimestamp),
"Copyright (c) 2011 The Broad Institute",
"Please view our documentation at http://www.broadinstitute.org/gsa/wiki",
"For support, please view our support site at http://getsatisfaction.com/gsa")
}
private def getQueueVersion : String = {
var stingResources : ResourceBundle = TextFormattingUtils.loadResourceBundle("StingText")
if ( stingResources.containsKey("org.broadinstitute.sting.queue.QueueVersion.version") ) {
stingResources.getString("org.broadinstitute.sting.queue.QueueVersion.version")
}
else {
"<unknown>"
}
}
private def getBuildTimestamp : String = {
var stingResources : ResourceBundle = TextFormattingUtils.loadResourceBundle("StingText")
if ( stingResources.containsKey("build.timestamp") ) {
stingResources.getString("build.timestamp")
}
else {
"<unknown>"
}
}
def shutdown() = { def shutdown() = {
shuttingDown = true shuttingDown = true
qGraph.shutdown() qGraph.shutdown()