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We didn't actually support all of these extensions. Updated to be accurate. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5722 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2011-05-02 19:03:46 +00:00
parent a93a9ac663
commit fcf8cff64a
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/datasources/reference/ReferenceDataSource.java
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@ -181,7 +181,7 @@ public class ReferenceDataSource implements ReferenceDataSourceProgressListener
index = new CachingIndexedFastaSequenceFile(fastaFile); index = new CachingIndexedFastaSequenceFile(fastaFile);
} catch (IllegalArgumentException e) { } catch (IllegalArgumentException e) {
throw new UserException.CouldNotReadInputFile(fastaFile, "Could not read reference sequence. The FASTA must have one of the following extensions: " + ReferenceSequenceFileFactory.FASTA_EXTENSIONS.toString(), e); throw new UserException.CouldNotReadInputFile(fastaFile, "Could not read reference sequence. The FASTA must have either a .fasta or .fa extension", e);
} }
catch (Exception e) { catch (Exception e) {
throw new UserException.CouldNotReadInputFile(fastaFile, e); throw new UserException.CouldNotReadInputFile(fastaFile, e);