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equals signs can be important 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@870 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-06-01 16:56:21 +00:00
parent 4edb33788b
commit fc91e3e30e
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/iterators/MergingSamRecordIterator2.java
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@ -184,7 +184,7 @@ public class MergingSamRecordIterator2 implements CloseableIterator<SAMRecord>,
}
record.setHeader(samHeaderMerger.getMergedHeader());
if (this.samHeaderMerger.hasMergedSequenceDictionary() && record.getReferenceIndex() > 0) {
if (this.samHeaderMerger.hasMergedSequenceDictionary() && record.getReferenceIndex() >= 0) {
record.setReferenceIndex(this.samHeaderMerger.getNewSequenceMapping(iterator.getReader(),record.getReferenceIndex()));
}