diff --git a/public/java/test/org/broadinstitute/sting/utils/progressmeter/ProgressMeterDataUnitTest.java b/public/java/test/org/broadinstitute/sting/utils/progressmeter/ProgressMeterDataUnitTest.java new file mode 100644 index 000000000..d6ea3b227 --- /dev/null +++ b/public/java/test/org/broadinstitute/sting/utils/progressmeter/ProgressMeterDataUnitTest.java @@ -0,0 +1,86 @@ +/* + * Copyright (c) 2012 The Broad Institute + * + * Permission is hereby granted, free of charge, to any person + * obtaining a copy of this software and associated documentation + * files (the "Software"), to deal in the Software without + * restriction, including without limitation the rights to use, + * copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the + * Software is furnished to do so, subject to the following + * conditions: + * + * The above copyright notice and this permission notice shall be + * included in all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES + * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT + * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, + * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING + * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR + * THE USE OR OTHER DEALINGS IN THE SOFTWARE. + */ + +package org.broadinstitute.sting.utils.progressmeter; + +import org.broadinstitute.sting.BaseTest; +import org.broadinstitute.sting.utils.AutoFormattingTime; +import org.testng.Assert; +import org.testng.annotations.DataProvider; +import org.testng.annotations.Test; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.concurrent.TimeUnit; +import java.util.regex.Matcher; +import java.util.regex.Pattern; + +/** + * UnitTests for the ProgressMeterData + * + * User: depristo + * Date: 8/24/12 + * Time: 11:25 AM + * To change this template use File | Settings | File Templates. + */ +public class ProgressMeterDataUnitTest extends BaseTest { + @Test + public void testBasic() { + Assert.assertEquals(new ProgressMeterData(1.0, 2, 3).getElapsedSeconds(), 1.0); + Assert.assertEquals(new ProgressMeterData(1.0, 2, 3).getUnitsProcessed(), 2); + Assert.assertEquals(new ProgressMeterData(1.0, 2, 3).getBpProcessed(), 3); + } + + @Test + public void testFraction() { + final double TOL = 1e-3; + Assert.assertEquals(new ProgressMeterData(1.0, 1, 1).calculateFractionGenomeTargetCompleted(10), 0.1, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, 1, 2).calculateFractionGenomeTargetCompleted(10), 0.2, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, 1, 1).calculateFractionGenomeTargetCompleted(100), 0.01, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, 1, 2).calculateFractionGenomeTargetCompleted(100), 0.02, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, 1, 1).calculateFractionGenomeTargetCompleted(0), 1.0, TOL); + } + + @Test + public void testSecondsPerBP() { + final double TOL = 1e-3; + final long M = 1000000; + Assert.assertEquals(new ProgressMeterData(1.0, 1, M).secondsPerMillionBP(), 1.0, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, 1, M/10).secondsPerMillionBP(), 10.0, TOL); + Assert.assertEquals(new ProgressMeterData(2.0, 1, M).secondsPerMillionBP(), 2.0, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, 1, 0).secondsPerMillionBP(), 1e6, TOL); + } + + @Test + public void testSecondsPerElement() { + final double TOL = 1e-3; + final long M = 1000000; + Assert.assertEquals(new ProgressMeterData(1.0, M, 1).secondsPerMillionElements(), 1.0, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, M/10, 1).secondsPerMillionElements(), 10.0, TOL); + Assert.assertEquals(new ProgressMeterData(2.00, M, 1).secondsPerMillionElements(), 2.0, TOL); + Assert.assertEquals(new ProgressMeterData(1.0, 0, 1).secondsPerMillionElements(), 1e6, TOL); + } +}