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DiffObjects no longer prints out the file name in the status so MD5 are stable

This commit is contained in:
Mark DePristo 2011-10-10 15:10:57 -04:00
parent ac41b303fd
commit fb72bcf732
2 changed files with 4 additions and 4 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjectsWalker.java
View File

@ -219,10 +219,10 @@ public class DiffObjectsWalker extends RodWalker<Integer, Integer> {
@Override
public void onTraversalDone(Integer sum) {
out.printf("Reading master file %s%n", masterFile);
//out.printf("Reading master file %s%n", masterFile);
DiffElement master = diffEngine.createDiffableFromFile(masterFile, MAX_OBJECTS_TO_READ);
out.printf(" Read %d objects%n", master.size());
out.printf("Reading test file %s%n", testFile);
//out.printf("Reading test file %s%n", testFile);
DiffElement test = diffEngine.createDiffableFromFile(testFile, MAX_OBJECTS_TO_READ);
out.printf(" Read %d objects%n", test.size());

4
public/java/test/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjectsIntegrationTest.java
View File

@ -50,8 +50,8 @@ public class DiffObjectsIntegrationTest extends WalkerTest {
@DataProvider(name = "data")
public Object[][] createData() {
new TestParams(testDir + "diffTestMaster.vcf", testDir + "diffTestTest.vcf", "996dd8f24f2db98305d0fd8f155fc7f9");
new TestParams(testDir + "exampleBAM.bam", testDir + "exampleBAM.simple.bam", "bf4e25cbc748e2441afd891e5c2722d6");
new TestParams(testDir + "diffTestMaster.vcf", testDir + "diffTestTest.vcf", "ed377322c615abc7dceb97025076078d");
new TestParams(testDir + "exampleBAM.bam", testDir + "exampleBAM.simple.bam", "02e46f5d2ebb3d49570850595b3f792e");
return TestParams.getTests(TestParams.class);
}