From fb5d595ef06aeb516a98fb0f246c590ea02a9bc4 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 22 Sep 2010 16:50:03 +0000
Subject: [PATCH] Disable VCF header output in the Beagle integrationtest.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4327 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/beagle/BeagleIntegrationTest.java        | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java
index 71fb292c4..0238d8dd5 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java
@@ -41,7 +41,7 @@ public class BeagleIntegrationTest extends WalkerTest {
                         "-B:beagleR2,BEAGLE " + beagleValidationDataLocation + "inttestbgl.r2 " +
                         "-B:beagleProbs,BEAGLE " + beagleValidationDataLocation + "inttestbgl.gprobs " +
                         "-B:beaglePhased,BEAGLE " + beagleValidationDataLocation + "inttestbgl.phased " +
-                        "-o %s", 1, Arrays.asList("caf2a19009e50931157bb4a7b1763282"));
+                        "-o %s -NO_HEADER", 1, Arrays.asList("caf2a19009e50931157bb4a7b1763282"));
         executeTest("test BeagleOutputToVCF", spec);
     }