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Update integration tests to reflect header changes

This commit is contained in:
Mark DePristo 2012-06-22 13:06:24 -04:00
parent 7b96263f8b
commit fb26c0f054
2 changed files with 2 additions and 2 deletions
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2
public/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java
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@ -41,7 +41,7 @@ public class BeagleIntegrationTest extends WalkerTest {
"--beagleR2:BEAGLE " + beagleValidationDataLocation + "inttestbgl.r2 " + "--beagleR2:BEAGLE " + beagleValidationDataLocation + "inttestbgl.r2 " +
"--beagleProbs:BEAGLE " + beagleValidationDataLocation + "inttestbgl.gprobs " + "--beagleProbs:BEAGLE " + beagleValidationDataLocation + "inttestbgl.gprobs " +
"--beaglePhased:BEAGLE " + beagleValidationDataLocation + "inttestbgl.phased " + "--beaglePhased:BEAGLE " + beagleValidationDataLocation + "inttestbgl.phased " +
"-o %s --no_cmdline_in_header --allowMissingVCFHeaders", 1, Arrays.asList("c5522304abf0633041c7772dd7dafcea")); "-o %s --no_cmdline_in_header --allowMissingVCFHeaders", 1, Arrays.asList("cba514105039f7a56f7ecdd241fbdcca"));
spec.disableShadowBCF(); spec.disableShadowBCF();
executeTest("test BeagleOutputToVCF", spec); executeTest("test BeagleOutputToVCF", spec);
} }

2
public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFIntegrationTest.java
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@ -12,7 +12,7 @@ public class VCFIntegrationTest extends WalkerTest {
@Test(enabled = true) @Test(enabled = true)
public void testReadingAndWritingWitHNoChanges() { public void testReadingAndWritingWitHNoChanges() {
String md5ofInputVCF = "babf02baabcfa7f72a2c6f7da5fdc996"; String md5ofInputVCF = "d991abe6c6a7a778a60a667717903be0";
String testVCF = privateTestDir + "vcf4.1.example.vcf"; String testVCF = privateTestDir + "vcf4.1.example.vcf";
String baseCommand = "-R " + b37KGReference + " --no_cmdline_in_header -o %s "; String baseCommand = "-R " + b37KGReference + " --no_cmdline_in_header -o %s ";