From fac7ac51425af5543c412b573d9671d16f6063a4 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 6 Jul 2009 17:44:32 +0000
Subject: [PATCH] Don't print out 0 coverage (which is always 0)

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1174 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/gatk/walkers/CoverageHistogram.java        | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/CoverageHistogram.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/CoverageHistogram.java
index 5ebe5b6b5..d39ad43b4 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/CoverageHistogram.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/CoverageHistogram.java
@@ -62,7 +62,7 @@ public class CoverageHistogram extends LocusWalker<Integer,Integer>
 		out.printf("# mean:%f num_sites:%d\n\n", mean_coverage, num_sites);
 
 		out.println("depth count");
-		for (int i = 0; i < max_depth; i++)
+		for (int i = 1; i < max_depth; i++)
 		{
 			out.printf("%d %d\n", i, coverage_hist[i]);
 		}