Bugfix for GSA-552
-- https://jira.broadinstitute.org/browse/GSA-552 -- User reports a null exception while using VariantsToVCF: http://gatkforums.broadinstitute.org/discussion/1461/nullpointerexception-converting-vcf3-to-vcf-using-variantstovcf The problem is that he left out an input VCF file for the --variant argument and the command-line argument parsing code didn't catch this, so we NPE out later on.
This commit is contained in:
parent
682a72faf7
commit
fa9b2a91d0
|
|
@ -406,7 +406,7 @@ public abstract class ArgumentTypeDescriptor {
|
|||
else
|
||||
throw new UserException.CommandLineException(
|
||||
String.format("Failed to parse value %s for argument %s. Message: %s",
|
||||
value.asString(), fieldName, e.getMessage()));
|
||||
value, fieldName, e.getMessage()));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue