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Backing off - need to change pileup interface for rank sum tests before indels can be annotated with them 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5804 348d0f76-0448-11de-a6fe-93d51630548a
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delangel 2011-05-13 21:54:54 +00:00
parent befbcd274b
commit fa75efb6ac
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/annotator/RankSumTest.java
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@ -22,7 +22,7 @@ public abstract class RankSumTest implements InfoFieldAnnotation, StandardAnnota
if ( stratifiedContexts.size() == 0 )
return null;
if ( !vc.isBiallelic() )
if ( !vc.isBiallelic() || !vc.isSNP() )
return null;
final Map<String, Genotype> genotypes = vc.getGenotypes();