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Perhaps both, Eric. Perhaps both. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4422 348d0f76-0448-11de-a6fe-93d51630548a
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chartl 2010-10-04 13:56:04 +00:00
parent 0eb777612a
commit f978c25b9d
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java
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@ -256,7 +256,7 @@ public class SelectVariants extends RodWalker<Integer, Integer> {
else if (g.isHomVar()) { alleleCount += 2; }
String dp = (String) g.getAttribute("DP");
if (dp != null && ! dp.equals(VCFConstants.MISSING_DEPTH_v3)) {
if (dp != null && ! dp.equals(VCFConstants.MISSING_DEPTH_v3) && ! dp.equals(VCFConstants.MISSING_VALUE_v4) ) {
depth += Integer.valueOf(dp);
}
}