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My last checkin updating R code broke an unrelated UnifiedGenotyper integration test. Eric says that I should take out the verbose test. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2576 348d0f76-0448-11de-a6fe-93d51630548a
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rpoplin 2010-01-13 22:28:10 +00:00
parent 7f97041875
commit f96b2b211e
1 changed files with 1 additions and 2 deletions
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3
java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
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@ -212,13 +212,12 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
// -------------------------------------------------------------------------------------------------------------- // --------------------------------------------------------------------------------------------------------------
@Test @Test
public void testOtherOutput() { public void testOtherOutput() {
String[] md5s = {"a5dce541f00d3fe364d110f1cae53538", "677963a26f867fbbd5f030cc3df55075", "cea954546a304aa98fc3a18d4305090a"}; String[] md5s = {"a5dce541f00d3fe364d110f1cae53538", "cea954546a304aa98fc3a18d4305090a"};
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T UnifiedGenotyper" + "-T UnifiedGenotyper" +
" -R " + oneKGLocation + "reference/human_b36_both.fasta" + " -R " + oneKGLocation + "reference/human_b36_both.fasta" +
" -I " + validationDataLocation + "low_coverage_CEU.chr1.10k-11k.bam" + " -I " + validationDataLocation + "low_coverage_CEU.chr1.10k-11k.bam" +
" -varout %s" + " -varout %s" +
" -verbose %s" +
" -beagle %s" + " -beagle %s" +
" -L 1:10,023,400-10,024,000" + " -L 1:10,023,400-10,024,000" +
" -bm empirical" + " -bm empirical" +