From f96b2b211e84cbb496306d5391cbb1d5af461b19 Mon Sep 17 00:00:00 2001 From: rpoplin Date: Wed, 13 Jan 2010 22:28:10 +0000 Subject: [PATCH] My last checkin updating R code broke an unrelated UnifiedGenotyper integration test. Eric says that I should take out the verbose test. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2576 348d0f76-0448-11de-a6fe-93d51630548a --- .../walkers/genotyper/UnifiedGenotyperIntegrationTest.java | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java index a78887043..f99e37cfb 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java @@ -212,13 +212,12 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { // -------------------------------------------------------------------------------------------------------------- @Test public void testOtherOutput() { - String[] md5s = {"a5dce541f00d3fe364d110f1cae53538", "677963a26f867fbbd5f030cc3df55075", "cea954546a304aa98fc3a18d4305090a"}; + String[] md5s = {"a5dce541f00d3fe364d110f1cae53538", "cea954546a304aa98fc3a18d4305090a"}; WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( "-T UnifiedGenotyper" + " -R " + oneKGLocation + "reference/human_b36_both.fasta" + " -I " + validationDataLocation + "low_coverage_CEU.chr1.10k-11k.bam" + " -varout %s" + - " -verbose %s" + " -beagle %s" + " -L 1:10,023,400-10,024,000" + " -bm empirical" +