diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java index a78887043..f99e37cfb 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java @@ -212,13 +212,12 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { // -------------------------------------------------------------------------------------------------------------- @Test public void testOtherOutput() { - String[] md5s = {"a5dce541f00d3fe364d110f1cae53538", "677963a26f867fbbd5f030cc3df55075", "cea954546a304aa98fc3a18d4305090a"}; + String[] md5s = {"a5dce541f00d3fe364d110f1cae53538", "cea954546a304aa98fc3a18d4305090a"}; WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( "-T UnifiedGenotyper" + " -R " + oneKGLocation + "reference/human_b36_both.fasta" + " -I " + validationDataLocation + "low_coverage_CEU.chr1.10k-11k.bam" + " -varout %s" + - " -verbose %s" + " -beagle %s" + " -L 1:10,023,400-10,024,000" + " -bm empirical" +