From f91b015e0e79f7a5aeb839efce42f629a4d498f2 Mon Sep 17 00:00:00 2001
From: Khalid Shakir <kshakir@broadinstitute.org>
Date: Thu, 6 Oct 2011 22:33:21 -0400
Subject: [PATCH] Made the BaseTest.testDir absolute

---
 public/java/test/org/broadinstitute/sting/BaseTest.java | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/public/java/test/org/broadinstitute/sting/BaseTest.java b/public/java/test/org/broadinstitute/sting/BaseTest.java
index 35a81770d..8e11add33 100755
--- a/public/java/test/org/broadinstitute/sting/BaseTest.java
+++ b/public/java/test/org/broadinstitute/sting/BaseTest.java
@@ -80,7 +80,8 @@ public abstract class BaseTest {
     public static final String networkTempDir = "/broad/shptmp/";
     public static final File networkTempDirFile = new File(networkTempDir);
 
-    public static final String testDir = "public/testdata/";
+    public static final File testDirFile = new File("public/testdata/");
+    public static final String testDir = testDirFile.getAbsolutePath() + "/";
 
     /** before the class starts up */
     static {