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useful convenience function to get a genotype associated with a particular sample 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2515 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-01-06 15:03:07 +00:00
parent 34519b3e3b
commit f857159343
1 changed files with 10 additions and 0 deletions
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10
java/src/org/broadinstitute/sting/gatk/refdata/RodVCF.java
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@ -282,6 +282,16 @@ public class RodVCF extends BasicReferenceOrderedDatum implements VariationRod,
return mCurrentRecord.getVCFGenotypeRecords(); return mCurrentRecord.getVCFGenotypeRecords();
} }
/**
* Returns the genotype associated with sample, or null if the genotype is missing
*
* @param sampleName the name of the sample genotype to fetch
* @return
*/
public Genotype getGenotype(final String sampleName) {
return mCurrentRecord.getGenotype(sampleName);
}
/** /**
* do we have the specified genotype? not all backedByGenotypes * do we have the specified genotype? not all backedByGenotypes
* have all the genotype data. * have all the genotype data.