diff --git a/public/java/src/org/broadinstitute/sting/utils/variant/GATKVariantContextUtils.java b/public/java/src/org/broadinstitute/sting/utils/variant/GATKVariantContextUtils.java index e0c32d5d5..c36d7f888 100644 --- a/public/java/src/org/broadinstitute/sting/utils/variant/GATKVariantContextUtils.java +++ b/public/java/src/org/broadinstitute/sting/utils/variant/GATKVariantContextUtils.java @@ -1152,11 +1152,11 @@ public class GATKVariantContextUtils { * @param builder the VC builder */ private static void removeStaleAttributesAfterMerge(final VariantContextBuilder builder) { - builder.rmAttribute(VCFConstants.ALLELE_COUNT_KEY); - builder.rmAttribute(VCFConstants.ALLELE_FREQUENCY_KEY); - builder.rmAttribute(VCFConstants.ALLELE_NUMBER_KEY); - builder.rmAttribute(VCFConstants.MLE_ALLELE_COUNT_KEY); - builder.rmAttribute(VCFConstants.MLE_ALLELE_FREQUENCY_KEY); + builder.rmAttributes(Arrays.asList(VCFConstants.ALLELE_COUNT_KEY, + VCFConstants.ALLELE_FREQUENCY_KEY, + VCFConstants.ALLELE_NUMBER_KEY, + VCFConstants.MLE_ALLELE_COUNT_KEY, + VCFConstants.MLE_ALLELE_FREQUENCY_KEY)); } /** diff --git a/settings/repository/org.broadinstitute/variant-1.104.1634.jar b/settings/repository/org.broadinstitute/variant-1.105.1640.jar similarity index 91% rename from settings/repository/org.broadinstitute/variant-1.104.1634.jar rename to settings/repository/org.broadinstitute/variant-1.105.1640.jar index 6724e0588..f2d01a49e 100644 Binary files a/settings/repository/org.broadinstitute/variant-1.104.1634.jar and b/settings/repository/org.broadinstitute/variant-1.105.1640.jar differ diff --git a/settings/repository/org.broadinstitute/variant-1.104.1634.xml b/settings/repository/org.broadinstitute/variant-1.105.1640.xml similarity index 70% rename from settings/repository/org.broadinstitute/variant-1.104.1634.xml rename to settings/repository/org.broadinstitute/variant-1.105.1640.xml index 9e4b49241..842b1c8bc 100644 --- a/settings/repository/org.broadinstitute/variant-1.104.1634.xml +++ b/settings/repository/org.broadinstitute/variant-1.105.1640.xml @@ -1,3 +1,3 @@ - +