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Updating md5s because MultiallelicSummary is now standard

This commit is contained in:
Eric Banks 2012-03-13 16:31:13 -04:00
parent ae65d86b81
commit f76da1efd2
1 changed files with 5 additions and 5 deletions
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10
public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
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@ -301,7 +301,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
" --eval " + validationDataLocation + "yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.vcf" +
" --comp:comp_genotypes,VCF3 " + validationDataLocation + "yri.trio.gatk.ug.head.vcf";
WalkerTestSpec spec = new WalkerTestSpec(withSelect(tests, "DP < 50", "DP50") + " " + extraArgs + " -ST CpG -o %s",
1, Arrays.asList("c2a4b0266c509944eafe6220fd8389da"));
1, Arrays.asList("1739654de350541edf429888b708ae01"));
executeTestParallel("testSelect1", spec);
}
@ -329,7 +329,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
@Test
public void testCompVsEvalAC() {
String extraArgs = "-T VariantEval -R "+b36KGReference+" -o %s -ST CpG -EV GenotypeConcordance --eval:evalYRI,VCF3 " + validationDataLocation + "yri.trio.gatk.ug.very.few.lines.vcf --comp:compYRI,VCF3 " + validationDataLocation + "yri.trio.gatk.fake.genotypes.ac.test.vcf";
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("19cde5078dd7284c95be4797695d3200"));
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("d57cf846bc26d338edcf181fb0c85535"));
executeTestParallel("testCompVsEvalAC",spec);
}
@ -359,7 +359,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
" --dbsnp " + b37dbSNP132 +
" --eval:evalBI " + validationDataLocation + "VariantEval/ALL.20100201.chr20.bi.sites.vcf" +
" -noST -ST Novelty -o %s";
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("5ac240e33082887264e07be7de0f095f"));
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("b663745a39f62bfa5b5d486811cf57ec"));
executeTestParallel("testEvalTrackWithoutGenotypes",spec);
}
@ -371,7 +371,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
" --eval:evalBI " + validationDataLocation + "VariantEval/ALL.20100201.chr20.bi.sites.vcf" +
" --eval:evalBC " + validationDataLocation + "VariantEval/ALL.20100201.chr20.bc.sites.vcf" +
" -noST -ST Novelty -o %s";
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("4dec767b6e7f2743eef89e586faab948"));
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("f1e1b1469dca86d72ae79a2d3e10612c"));
executeTestParallel("testMultipleEvalTracksWithoutGenotypes",spec);
}
@ -487,7 +487,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
"-o %s"
),
1,
Arrays.asList("8cb8a393a0176e4df4290af7817c8647")
Arrays.asList("417875ab1924b7e7950fa10daee393d2")
);
executeTest("testModernVCFWithLargeIndels", spec);
}