Merged bug fix from Stable into Unstable

2011-10-23 16:37:12 -04:00 · 2011-10-23 16:37:12 -04:00 · f6ccac889b
parent c3cb07fc1d 585a45b7a3
commit f6ccac889b
1 changed files with 2 additions and 1 deletions
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/ClipReadsWalker.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/ClipReadsWalker.java
@ -475,7 +475,8 @@ public class ClipReadsWalker extends ReadWalker<ClipReadsWalker.ReadClipperWithD
    }

    public void onTraversalDone(ClippingData data) {
-        out.printf(data.toString());
+        if ( out != null )
+            out.printf(data.toString());
    }

    // --------------------------------------------------------------------------------------------------------------