diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/VariantSummary.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/VariantSummary.java index a271d3c35..b3f3630bd 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/VariantSummary.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/VariantSummary.java @@ -224,7 +224,7 @@ public class VariantSummary extends VariantEvaluator implements StandardEval { allVariantCounts.inc(type, ALL); // type specific calculations - if ( type == Type.SNP ) { + if ( type == Type.SNP && eval.isBiallelic() ) { titvTable = VariantContextUtils.isTransition(eval) ? transitionsPerSample : transversionsPerSample; titvTable.inc(type, ALL); }