From f5b66647ac5c28c980cb9e5703155fa3d01bc72c Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 11 Oct 2010 20:52:08 +0000
Subject: [PATCH] Include all standard annotations

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4479 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/VariantAnnotator.xml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/packages/VariantAnnotator.xml b/packages/VariantAnnotator.xml
index bf8e5a25b..88c0701f0 100644
--- a/packages/VariantAnnotator.xml
+++ b/packages/VariantAnnotator.xml
@@ -12,7 +12,7 @@
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.interfaces.InfoFieldAnnotation" />
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.interfaces.StandardAnnotation" />
       <!-- The annotations -->
-      <class name="org.broadinstitute.sting.gatk.walkers.annotator.AlleleBalance" />
+      <class name="org.broadinstitute.sting.gatk.walkers.annotator.DepthPerAlleleBySample" />
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.DepthOfCoverage" />
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.HomopolymerRun" />
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.MappingQualityZero" />
@@ -20,6 +20,7 @@
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.RMSMappingQuality" />
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.SpanningDeletions" />
       <class name="org.broadinstitute.sting.gatk.walkers.annotator.HaplotypeScore" />
+      <class name="org.broadinstitute.sting.gatk.walkers.annotator.ChromosomeCounts" />
     </dependencies>
   </executable>
 </package>