From f4977965b6b527485c0d9bd25df3bcb0b0b6f75c Mon Sep 17 00:00:00 2001
From: rpoplin <rpoplin@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 20 Apr 2010 16:22:40 +0000
Subject: [PATCH] Removing debug statements

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3208 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/variantoptimizer/ApplyVariantClustersWalker.java   | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantoptimizer/ApplyVariantClustersWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantoptimizer/ApplyVariantClustersWalker.java
index 161be9e97..f9b8780af 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantoptimizer/ApplyVariantClustersWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantoptimizer/ApplyVariantClustersWalker.java
@@ -178,9 +178,6 @@ public class ApplyVariantClustersWalker extends RodWalker<ExpandingArrayList<Var
                     vcfWriter.addRecord( vcf );
 
                 } else { // not a SNP or is filtered so just dump it out to the VCF file
-                    System.out.println(vc.getGenotype("NA12878").getAttributes());
-                    System.out.println(vcf.getGenotype("NA12878").getFields());
-                    System.out.println();
                     vcfWriter.addRecord( vcf );
                 }
             }