diff --git a/packages/AnnotateSecondaryBase.xml b/packages/AnnotateSecondaryBase.xml
new file mode 100644
index 000000000..766310f20
--- /dev/null
+++ b/packages/AnnotateSecondaryBase.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<package>
+  <name>AnnotateSecondaryBase</name>
+  <main-class>org.broadinstitute.sting.secondarybase.AnnotateSecondaryBase</main-class>
+</package>