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Fixed RodBind with tag order. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5532 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2011-03-29 14:47:26 +00:00
parent 8ae14793f2
commit f443137dda
1 changed files with 1 additions and 1 deletions
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2
scala/src/org/broadinstitute/sting/queue/extensions/gatk/RodBind.scala
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@ -40,7 +40,7 @@ object RodBind {
def formatCommandLine(cmdLineParam: String)(prefix: String, value: Any, suffix: String) = { def formatCommandLine(cmdLineParam: String)(prefix: String, value: Any, suffix: String) = {
value match { value match {
case rodBind: RodBind if (rodBind.tag != null) => case rodBind: RodBind if (rodBind.tag != null) =>
" %s:%s,%s,%s %s".format(cmdLineParam, rodBind.trackName, rodBind.trackType, rodBind.getPath, rodBind.tag) " %s:%s,%s,%s %s".format(cmdLineParam, rodBind.trackName, rodBind.trackType, rodBind.tag, rodBind.getPath)
case rodBind: RodBind => case rodBind: RodBind =>
" %s:%s,%s %s".format(cmdLineParam, rodBind.trackName, rodBind.trackType, rodBind.getPath) " %s:%s,%s %s".format(cmdLineParam, rodBind.trackName, rodBind.trackType, rodBind.getPath)
} }