From f443137dda19a84984a236ba3531cd7f859678a9 Mon Sep 17 00:00:00 2001 From: kshakir Date: Tue, 29 Mar 2011 14:47:26 +0000 Subject: [PATCH] Fixed RodBind with tag order. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5532 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/queue/extensions/gatk/RodBind.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/src/org/broadinstitute/sting/queue/extensions/gatk/RodBind.scala b/scala/src/org/broadinstitute/sting/queue/extensions/gatk/RodBind.scala index 00b42546b..42f63e225 100644 --- a/scala/src/org/broadinstitute/sting/queue/extensions/gatk/RodBind.scala +++ b/scala/src/org/broadinstitute/sting/queue/extensions/gatk/RodBind.scala @@ -40,7 +40,7 @@ object RodBind { def formatCommandLine(cmdLineParam: String)(prefix: String, value: Any, suffix: String) = { value match { case rodBind: RodBind if (rodBind.tag != null) => - " %s:%s,%s,%s %s".format(cmdLineParam, rodBind.trackName, rodBind.trackType, rodBind.getPath, rodBind.tag) + " %s:%s,%s,%s %s".format(cmdLineParam, rodBind.trackName, rodBind.trackType, rodBind.tag, rodBind.getPath) case rodBind: RodBind => " %s:%s,%s %s".format(cmdLineParam, rodBind.trackName, rodBind.trackType, rodBind.getPath) }