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Merge pull request #811 from broadinstitute/seru71_fix_MateSameStrandFilter 

Corrected logical expression in MateSameStrandFilter
This commit is contained in:
Geraldine Van der Auwera 2015-02-23 17:57:10 -05:00
parent 9491c0333f 3ee0311fdb
commit f3a57a6b07
1 changed files with 1 additions and 1 deletions
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public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/filters/MateSameStrandFilter.java
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@ -37,6 +37,6 @@ public class MateSameStrandFilter extends ReadFilter {
public boolean filterOut(SAMRecord read) { public boolean filterOut(SAMRecord read) {
return (! read.getReadPairedFlag() ) || read.getMateUnmappedFlag() || read.getDuplicateReadFlag() || return (! read.getReadPairedFlag() ) || read.getMateUnmappedFlag() || read.getDuplicateReadFlag() ||
read.getReadFailsVendorQualityCheckFlag() || read.getMateNegativeStrandFlag() != read.getReadNegativeStrandFlag(); read.getReadFailsVendorQualityCheckFlag() || (read.getMateNegativeStrandFlag() == read.getReadNegativeStrandFlag());
} }
} }