From 45f2ca8d990bb9b9ed4b65f50eb81d9eb95688ba Mon Sep 17 00:00:00 2001
From: Kiran V Garimella <kiran@broadinstitute.org>
Date: Sat, 23 Jul 2011 01:21:07 -0400
Subject: [PATCH] Changed MD5 to reflect latest changes to PhaseByTransmission.

---
 .../PhaseByTransmissionIntegrationTest.java   | 24 +++----------------
 1 file changed, 3 insertions(+), 21 deletions(-)

diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java
index 6e8c139dd..536a1ab9a 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java
@@ -10,7 +10,7 @@ public class PhaseByTransmissionIntegrationTest extends WalkerTest {
     private static String fundamentalTestVCF = phaseByTransmissionTestDataRoot + "/" + "FundamentalsTest.unfiltered.vcf";
 
     @Test
-    public void testBasicFunctionalityWithoutFilters() {
+    public void testBasicFunctionality() {
         WalkerTestSpec spec = new WalkerTestSpec(
                 buildCommandLine(
                         "-T PhaseByTransmission",
@@ -20,26 +20,8 @@ public class PhaseByTransmissionIntegrationTest extends WalkerTest {
                         "-o %s"
                 ),
                 1,
-                Arrays.asList("416a483e87358cdcb0b09a496e3254c0")
+                Arrays.asList("5067f9b1312ada1bc5e529619a9111fe")
         );
-        executeTest("testBasicFunctionalityWithoutFilters", spec);
+        executeTest("testBasicFunctionality", spec);
     }
-
-    /*
-    @Test
-    public void testBasicFunctionalityWithFilters() {
-        WalkerTestSpec spec = new WalkerTestSpec(
-                buildCommandLine(
-                        "-T PhaseByTransmission",
-                        "-R " + b37KGReference,
-                        "-B:variant,VCF " + fundamentalTestVCF,
-                        "-f NA12892+NA12891=NA12878",
-                        "-o %s"
-                ),
-                1,
-                Arrays.asList("8c5db343567e90e97993912c7e541d0d")
-        );
-        executeTest("testBasicFunctionalityWithFilters", spec);
-    }
-    */
 }