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Merge branch 'laptop'

This commit is contained in:
Kiran V Garimella 2011-07-23 01:25:36 -04:00
parent 5af9d50183 45f2ca8d99
commit f366124778
1 changed files with 3 additions and 21 deletions
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24
public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java
View File

@ -10,7 +10,7 @@ public class PhaseByTransmissionIntegrationTest extends WalkerTest {
private static String fundamentalTestVCF = phaseByTransmissionTestDataRoot + "/" + "FundamentalsTest.unfiltered.vcf";
@Test
public void testBasicFunctionalityWithoutFilters() {
public void testBasicFunctionality() {
WalkerTestSpec spec = new WalkerTestSpec(
buildCommandLine(
"-T PhaseByTransmission",
@ -20,26 +20,8 @@ public class PhaseByTransmissionIntegrationTest extends WalkerTest {
"-o %s"
),
1,
Arrays.asList("416a483e87358cdcb0b09a496e3254c0")
Arrays.asList("5067f9b1312ada1bc5e529619a9111fe")
);
executeTest("testBasicFunctionalityWithoutFilters", spec);
executeTest("testBasicFunctionality", spec);
}
/*
@Test
public void testBasicFunctionalityWithFilters() {
WalkerTestSpec spec = new WalkerTestSpec(
buildCommandLine(
"-T PhaseByTransmission",
"-R " + b37KGReference,
"-B:variant,VCF " + fundamentalTestVCF,
"-f NA12892+NA12891=NA12878",
"-o %s"
),
1,
Arrays.asList("8c5db343567e90e97993912c7e541d0d")
);
executeTest("testBasicFunctionalityWithFilters", spec);
}
*/
}