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Wow, there are a ton of errors captured having to do with being unable to merge the temp Tribble output. I'm expanding the error message a bit to help see if we can do anything going forward.

This commit is contained in:
Eric Banks 2012-07-18 12:31:59 -04:00
parent e4db8dde91
commit f2fe59a9d4
1 changed files with 2 additions and 1 deletions
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3
public/java/src/org/broadinstitute/sting/gatk/executive/HierarchicalMicroScheduler.java
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@ -256,7 +256,8 @@ public class HierarchicalMicroScheduler extends MicroScheduler implements Hierar
// Specifically catch Tribble I/O exceptions and rethrow them as Reviewed. We don't expect // Specifically catch Tribble I/O exceptions and rethrow them as Reviewed. We don't expect
// any issues here because we created the Tribble output file mere moments ago and expect it to // any issues here because we created the Tribble output file mere moments ago and expect it to
// be completely valid. // be completely valid.
throw new ReviewedStingException("Unable to merge temporary Tribble output file.",ex); final String reason = ex.getMessage();
throw new ReviewedStingException("Unable to merge temporary Tribble output file" + (reason == null ? "." : (" (" + reason + ").")), ex);
} }
} }
} }