From f2fe59a9d452ca57efa50befdef135fd6e9aed4e Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Wed, 18 Jul 2012 12:31:59 -0400 Subject: [PATCH] Wow, there are a ton of errors captured having to do with being unable to merge the temp Tribble output. I'm expanding the error message a bit to help see if we can do anything going forward. --- .../sting/gatk/executive/HierarchicalMicroScheduler.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/executive/HierarchicalMicroScheduler.java b/public/java/src/org/broadinstitute/sting/gatk/executive/HierarchicalMicroScheduler.java index b821b98e6..79362ff2f 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/executive/HierarchicalMicroScheduler.java +++ b/public/java/src/org/broadinstitute/sting/gatk/executive/HierarchicalMicroScheduler.java @@ -256,7 +256,8 @@ public class HierarchicalMicroScheduler extends MicroScheduler implements Hierar // Specifically catch Tribble I/O exceptions and rethrow them as Reviewed. We don't expect // any issues here because we created the Tribble output file mere moments ago and expect it to // be completely valid. - throw new ReviewedStingException("Unable to merge temporary Tribble output file.",ex); + final String reason = ex.getMessage(); + throw new ReviewedStingException("Unable to merge temporary Tribble output file" + (reason == null ? "." : (" (" + reason + ").")), ex); } } }