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doc added 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@464 348d0f76-0448-11de-a6fe-93d51630548a
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asivache 2009-04-17 16:43:25 +00:00
parent d639ec3776
commit f2f9fa3ed4
1 changed files with 3 additions and 0 deletions
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java/src/org/broadinstitute/sting/gatk/walkers/ReadWalker.java
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@ -14,6 +14,9 @@ public abstract class ReadWalker<MapType, ReduceType> extends Walker<MapType, Re
public boolean requiresOrderedReads() { return false; } public boolean requiresOrderedReads() { return false; }
// Do we actually want to operate on the context? // Do we actually want to operate on the context?
/** Must return true for reads that need to be processed. Reads, for which this method return false will
* be skipped by the engine and never passed to the walker.
*/
public boolean filter(LocusContext context, SAMRecord read) { public boolean filter(LocusContext context, SAMRecord read) {
// We are keeping all the reads // We are keeping all the reads
return true; return true;