From f258363cfcea9bfb2f600d646e971b6b44f6dc24 Mon Sep 17 00:00:00 2001
From: fromer <fromer@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 31 Jan 2011 22:29:28 +0000
Subject: [PATCH] Minor bug fix

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5150 348d0f76-0448-11de-a6fe-93d51630548a
---
 scala/qscript/oneoffs/fromer/phaseSamples.scala | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scala/qscript/oneoffs/fromer/phaseSamples.scala b/scala/qscript/oneoffs/fromer/phaseSamples.scala
index d341c9950..4e06c5c7d 100644
--- a/scala/qscript/oneoffs/fromer/phaseSamples.scala
+++ b/scala/qscript/oneoffs/fromer/phaseSamples.scala
@@ -122,7 +122,7 @@ class CombineVariants(vcfsToCombine: List[File]) extends org.broadinstitute.stin
 
     this.variantMergeOptions = Some(org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContextUtils.VariantMergeType.UNION)
 
-    this.out = new File(outputPhased)
+    this.out = outputPhased
 }
 
 }