diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorEngine.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorEngine.java index c0bfd254b..a7837813a 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorEngine.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorEngine.java @@ -109,7 +109,7 @@ public class VariantAnnotatorEngine { // check to see whether comp rods were included final RodBinding dbsnp = walker.getDbsnpRodBinding(); - if ( dbsnp.isBound() ) + if ( dbsnp != null && dbsnp.isBound() ) dbAnnotations.put(dbsnp, VCFConstants.DBSNP_KEY); final List> comps = walker.getCompRodBindings(); diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java index 7733635bd..0f2d73c3a 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java @@ -69,7 +69,7 @@ public class UnifiedGenotyper extends LocusWalker getDbsnpRodBinding() { return dbsnp.dbsnp; } - public RodBinding getSnpEffRodBinding() { return RodBinding.makeUnbound(SnpEffFeature.class); } + public RodBinding getSnpEffRodBinding() { return null; } public List> getCompRodBindings() { return Collections.emptyList(); } public List> getResourceRodBindings() { return Collections.emptyList(); }