diff --git a/java/src/org/broadinstitute/sting/utils/classloader/PackageUtils.java b/java/src/org/broadinstitute/sting/utils/classloader/PackageUtils.java
index 744b3fcdb..58bd3d8f8 100755
--- a/java/src/org/broadinstitute/sting/utils/classloader/PackageUtils.java
+++ b/java/src/org/broadinstitute/sting/utils/classloader/PackageUtils.java
@@ -123,6 +123,6 @@ public class PackageUtils {
     }
 
     public static Set<URL> getClassPathURLs() {
-        return ClasspathHelper.getUrlsForCurrentClasspath();
+        return ClasspathHelper.getUrlsForManifestsCurrentClasspath();
     }
 }