diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java index 2b91a4b8b..04dc19066 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java @@ -131,8 +131,7 @@ public class CombineVariants extends RodWalker { Collection vcs = tracker.getAllVariantContexts(ref, context.getLocation()); if ( ASSUME_IDENTICAL_SAMPLES ) { - final VariantContext vc = vcs.iterator().next(); - if( vc != null ) { + for ( final VariantContext vc : vcs ) { vcfWriter.add( vc, ref.getBase() ); }