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Renaming the plot output directory names.

This commit is contained in:
Mauricio Carneiro 2011-07-23 12:59:37 -04:00
parent 7688bda1a6
commit f0a6dd27a1
1 changed files with 2 additions and 2 deletions
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4
public/scala/qscript/org/broadinstitute/sting/queue/qscripts/RecalibrateBaseQualities.scala
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@ -42,8 +42,8 @@ class RecalibrateBaseQualities extends QScript {
val recalFile1: File = swapExt(bam, ".bam", ".recal1.csv")
val recalFile2: File = swapExt(bam, ".bam", ".recal2.csv")
val recalBam: File = swapExt(bam, ".bam", ".recal.bam")
val path1: String = bam + ".before"
val path2: String = bam + ".after"
val path1: String = recalBam + ".before"
val path2: String = recalBam + ".after"
add(cov(bam, recalFile1),
recal(bam, recalFile1, recalBam),