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A bit better output for ContextCovariate context size logging

This commit is contained in:
Mark DePristo 2012-08-12 13:45:52 -04:00
parent 243af0adb1
commit f032e0aba4
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ContextCovariate.java
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@ -66,7 +66,7 @@ public class ContextCovariate implements StandardCovariate {
mismatchesContextSize = RAC.MISMATCHES_CONTEXT_SIZE; mismatchesContextSize = RAC.MISMATCHES_CONTEXT_SIZE;
indelsContextSize = RAC.INDELS_CONTEXT_SIZE; indelsContextSize = RAC.INDELS_CONTEXT_SIZE;
logger.info("Context sizes: base substitution model " + mismatchesContextSize + ", indel substitution model " + indelsContextSize); logger.info("\t\tContext sizes: base substitution model " + mismatchesContextSize + ", indel substitution model " + indelsContextSize);
if (mismatchesContextSize > MAX_DNA_CONTEXT) if (mismatchesContextSize > MAX_DNA_CONTEXT)
throw new UserException.BadArgumentValue("mismatches_context_size", String.format("context size cannot be bigger than %d, but was %d", MAX_DNA_CONTEXT, mismatchesContextSize)); throw new UserException.BadArgumentValue("mismatches_context_size", String.format("context size cannot be bigger than %d, but was %d", MAX_DNA_CONTEXT, mismatchesContextSize));